| 20098 | | A02 | Bayesian Networks to Decision Making in Lymph Node Metastasis of Colorectal Cancer |
Md. Aminul Hoque |
| 22172 | | A04 | A large scale analysis in the human proteome detects correlation among disease associated mutations and perturbation of protein stability |
Rita Casadio |
| 22173 | | A05 | SNPs&GO: predicting the deleterious effect of human mutations using functional annotation. |
Emidio Capriotti |
| 20308 | | A07 | Uncovering Network Control Mechanisms in Induced Oncogenic Transformation of Human Mammary Epithelial Cells through Whole Transcriptome Analyses |
Sol Efroni |
| 20322 | | A09 | siRna – A Comprehensive Analysis Workflow Towards Better Understanding of High-throughput Screening Data. |
Vidal Fey |
| 20323 | | A10 | miRNA levels are associated with immune network activity and associate with disease outcome in Ovarian Cancer. A possible miRNA – network control mechanism. |
Sol Efroni |
| 20339 | | A11 | A Novel Bioinformatics Pipeline for Identification and Characterization of Fusion Transcripts in 31 Breast Cancer and Normal Cell Lines |
Yan Asmann |
| 20353 | | A12 | Feature extraction from Spinal cord images |
Sejong Oh |
| 20375 | | A14 | Cross-species candidate gene prioritization with MerKator |
Leon-Charles Tranchevent |
| 20377 | | A15 | A guide to web tools to prioritize candidate genes |
Leon-Charles Tranchevent |
| 20379 | | A16 | History-aware models for HIV therapy screening |
Jasmina Bogojeska |
| 20301 | | A17 | Network-based gene prioritization from expression data by diffusing through protein interaction networks |
Daniela Nitsch |
| 20391 | | A18 | Detecting cancer driving mutations by whole genome sequencing in the ICGC PedBrain project |
Barbara Hutter |
| 20168 | | A20 | Mapping the spread of HIV in Germany |
Glenn Lawyer |
| 20406 | | A21 | SNP4Disease: a knowledge database to detect disease associated SNPs |
David John |
| 20447 | | A25 | Transcriptomic profiles and gene networks of human Mesenchymal Stem Cells (MSCs) |
Beatriz Rosón |
| 20481 | | A27 | Association Rule Mining with Prior Knowledge for Alzheimer's Disease |
Peter Li |
| 20486 | | A29 | An Integrative Bioinformatic Predictor of Protein Sub-Cellular Localisation in Malaria |
Ben Woodcroft |
| 20530 | | A32 | Deconvoluting Cancer Genomes using an Optimal Scaffolder |
Niranjan Nagarajan |
| 20555 | | A34 | Chipster 2.0: User-friendly analysis software for next generation sequencing data with interactive genome viewer. |
Massimiliano Gentile |
| 20567 | | A37 | AllergenNet: a database applied to the study of allergenic proteins |
Helen Arcuri |
| 20570 | | A38 | Integrative analysis of expression and copy number profiles to find causal genes in cancer |
Celia Fontanillo |
| 20595 | | A39 | GUILDify: A web server for phenotypic characterization of genes by means of protein-protein interactions and graph algorithms |
Emre Guney |
| 20623 | | A41 | Bioinformatics for large scale characterization and tracking of gene-modified hematopoietic stem cells |
Manfred Schmidt |
| 20627 | | A42 | Detecting Intrahost Emergence of Recombinant Viruses within HIV-1 infections using Ultra-Deep Sequencing |
Felix Feyertag |
| 20656 | | A46 | Structural comparison of Erwinase and E. coli L-Asparaginase to facilitate rational engineering of a cancer drug |
Mainá Bitar |
| 20659 | | A47 | Inhaled Toxicant Interactions with Transcriptional Regulatory Networks in Frontline Lung Cells |
George Acquaah-Mensah |
| 20671 | | A48 | Multi-Harmony: detecting functional specificity in HIV differential replication rates |
K. Anton Feenstra |
| 20670 | | A49 | Data Based Identification of Estimation Models for Tumor Markers Using Evolutionary Computation |
Stephan Winkler |
| 20698 | | A50 | Models for reverse engineering of transcriptional networks in Yersinia enterocolitica infection |
Olivia Prazeres da Costa |
| 20704 | | A51 | A framework for whole-exome deep sequening data management and analysis |
Angelo Nuzzo |
| 20706 | | A52 | Genome-Wide Association Study of TB in the South African Colored Population: Comprehensive Gene and pathway-based Association Study |
Emile RUGAMIKA CHIMUSA |
| 20468 | | A54 | Hunting cancer predisposition genes by whole exome sequencing in relatives from affected family |
Tatiana Popova |
| 20738 | | A55 | deepBlockAlign: aligning profiles from short blocks of reads |
Jan Gorodkin |
| 20742 | | A56 | Integrating network co-expression analysis and gene expression in the analysis of coronary artery disease GWAS: application to CARDIoGRAM data |
Seraya Maouche |
| 20711 | | A57 | A Novel Algorithm for Identifying Non-canonical Splicing Regions Using RNA-Seq Data |
Yongsheng Bai |
| 20789 | | A59 | Personalized Medicine for Cancer |
Miguel García |
| 20817 | | A62 | Bioinformatics and Biodiversity: A holistic approach to enhancing drug discovery. |
Negusse Kitaba |
| 20824 | | A63 | Finding locally disrupted RNA structure from SNPs |
Jan Gorodkin |
| 20827 | | A64 | Heme Detoxification Protein: A promising antimalarial drug target. |
Dedan Githae |
| 20829 | | A65 | Network Analysis and validation of gene expression profiling of salivary gland from human and mice with primary Sjögren’s syndrome |
Hui Zhou |
| 20850 | | A67 | Candidate mutations for early-onset lung cancer by family genome sequencing |
Evangelos Simeonidis |
| 22182 | | A68 | Improving the detection of deleterious mutations integrating the predictions four well-tested methods |
Emidio Capriotti |
| 20874 | | A72 | Discovery of novel cancer pathway-activating genomic aberrations via a mutual information metric |
Olga Botvinnik |
| 20929 | | A74 | Prediction of miRNA gene targets – a combined computational and experimental approach |
Anastasis Oulas |
| 22642 | | A77 | Systematic Analysis of MicroRNAs Targeting the Androgen Receptor in Prostate Cancer Cells. |
Pekka Kohonen |
| 22696 | | A80 | Robust and accurate data enrichment statistics via distribution function of sum of weights |
Yi-Kuo Yu |
| 22709 | | A81 | Measuring the complexity of solving diseases |
Raul Rodriguez-Esteban |
| 22677 | | A82 | Nonparametric Estimation of an Unknown Probability Distribution Using Maximum Likelihood and Bayesian Approaches |
Alona Chubatiuk |
| 22713 | | A83 | Exploratory analysis of the structure and dynamics of healthy intestinal microbiota |
Leo Lahti |
| 22720 | | A85 | Identification of secondary targets for clinically used anti-tubercular drugs through binding site similarities |
Nagasuma Chandra |
| 22727 | | A86 | Re-visiting classification of HLA class-I molecules |
Nagasuma Chandra |
| 22731 | | A87 | A molecular based subtyping in juvenile idiopathic arthritis |
Margherita Squillario |
| 20448 | | B2 | Free energy and flexibility basis of SNP occurrence |
Luciana Oliveira |
| 20465 | | B3 | Pipeline for the training of NMR chemical shift prediction models |
Anna Katharina Dehof |
| 20459 | | B4 | Modeling of Actomyosin Interactions |
Cynthia Prudence |
| 20798 | | B5 | Fitting Comparative Models to X-ray Data with Kino-Geometric Sampling |
Henry van den Bedem |
| 22690 | | B6 | Insights to the Thrombospondin Signature Domain |
Thomas Haschka |
| 22679 | | B7 | Universal patterns of protein-ligand interactions: Gaussian Mixture Model analyses on three dimensional structure of proteins in Protein Data Bank. |
Kota Kasahara |
| 22712 | | B9 | Intrinsically disordered proteins/regions: an important factor in protein evolvability |
Akinori Sarai |
| 20229 | | C01 | Mining the FDA’s Adverse Event Reporting System (AERS) for Pathway Risk |
Mark Gosink |
| 20354 | | C02 | The use of virtual screening reveals a viral-like polymerase inhibitor, which complex with the M. perniciosa DNA polymerase |
Bruno Andrade |
| 20382 | | C03 | Consensus docking method |
Dariusz Plewczynski |
| 20394 | | C04 | Homology modeling and molecular docking studies of Mannosyl Transferase (pimB) in Mycobacterium tuberculosis |
Karthik Maddi |
| 20743 | | C06 | Homology Modeling and Molecular Dynamics Simulation of N-acetylglucosamine fosfomutase (AGM1) from Moniliphothora perniciosa |
Wagner Soares |
| 20835 | | C07 | EC-BLAST: A novel tool for searching similar enzymes based on chemical knowledge |
Syed Asad Rahman |
| 20864 | | C09 | A systems approach to characterization of molecular targets of imaging agents |
Ting Liu |
| 20893 | | C10 | Stereological and hormonal evidences of epithelial hyperplasia with improved fertility capacity induced by aqueous sesame leaves Intake in adult male sprague dawley rats accessory organs |
LUKEMAN ADELAJA JOSEPH shittu |
| 20267 | | D01 | Characterization of a mannose-binding Insecticidal lectin gene from Allium sativum (Garlic) |
Nusrah Afolabi-Balogun |
| 20389 | | D04 | Tools for comparative metagenome analysis |
Kathrin Aßhauer |
| 20485 | | D05 | Identification of transcription factors and their correlation with the high diversity of Stramenopiles. |
Francisco Buitrago |
| 20644 | | D09 | A new Perl toolkit for the detection and analysis of polymorphic loci and their application for bacterial typing |
Ralf KOEBNIK |
| 20705 | | D11 | GECKO2: A software tool for de novo gene cluster detection |
Katharina Jahn |
| 20739 | | D12 | Automated Segmentation of DNA Sequences |
Brona Brejova |
| 20772 | | D13 | Antimicrobial Resistance and susceptility profiling of four pathogenic organisms using UV irradiation. |
Olugbenga Taiwo |
| 20790 | | D16 | Protein sequences of the human genome compared to those of several model organisms |
Edda Kloppmann |
| 22649 | | D19 | QuartetS: a fast and accurate program for large-scale orthology detection |
Jaques Reifman |
| 22681 | | D20 | Computational analysis of metagenomes and metatranscriptomes: challenges and opportunities. |
Larisa Kiseleva |
| 22719 | | D22 | Species-specific open chromatin has evidence of branch-specific selection. |
Nathan Sheffield |
| 22718 | | D23 | Comparative Genomics for expression QTL |
Steffen Möller |
| 19914 | | E01 | Seqcrawler – A cloud ready indexing platform |
Olivier Sallou |
| 19916 | | E02 | Creating a Concept Map Interface to Visualize and Interpret a Comparative Effectiveness Data Model |
David Fenstermacher |
| 22615 | | E03 | SolDB: A Database of Solanum lycopersicum and Solanum tuberosum Primers |
Hassan Tariq |
| 22627 | | E05 | miRGator v2.0 and the construction of miRNA-disease network |
Wankyu Kim |
| 20209 | | E08 | GWAS Central: an advanced database for the integration and comparative interrogation of genome-wide association study datasets |
Sirisha Gollapudi |
| 20220 | | E09 | ISA tools: standard-compliant reporting and curation at the community level |
Susanna-Assunta Sansone |
| 20257 | | E10 | DARNED (Database of RNA editing). |
Pavel Baranov |
| 20264 | | E11 | Graph-based queries of Semantic-Web integrated biological data |
Marco Moretto |
| 20283 | | E12 | TMPad: an integrated structural database for helix-packing folds in transmembrane proteins |
Cheng-Wei Cheng |
| 20293 | | E13 | EBI Search: a new way to explore biology |
Andrew Jenkinson |
| 20355 | | E17 | A web-based tool for functional investigation of microRNAs : miRGator v2.0 |
Wankyu Kim |
| 20439 | | E20 | Sierra: A simple LIMS system for small sequencing facilities |
Simon Andrews |
| 20457 | | E21 | Soybean Knowledge Base (SoyKB) : A Web Resource for Soybean Translational Genomics |
Trupti Joshi |
| 20546 | | E23 | easyDAS: Automatic creation of DAS servers |
Bernat Gel Moreno |
| 20554 | | E24 | Wheat international sequence repository integrated with genomic and genetic data in GnpIS |
Michael Alaux |
| 20598 | | E26 | Virtual Fly Brain 3D Interaction Tool |
Nestor Milyaev |
| 20611 | | E28 | GenomeRNAi: A Phenotype Database for Large-scale RNAi Screens |
Esther Schmidt |
| 20638 | | E29 | PROSITE: Enhancing the functional characterization of proteins |
Nicolas Hulo |
| 20643 | | E30 | PHI-base 4.0: A Second Generation Pathogen-Host Interaction database |
Jacek Grzebyta |
| 20690 | | E32 | Recent developments to the Ensembl website |
Stephen Trevanion |
| 20701 | | E33 | The Bioinformatics Links Directory: A Community Curated Collection of Bioinformatics Links, Tools and Databases |
Michelle Brazas |
| 20722 | | E34 | Structural Biology Knowledgebase: An Online Portal to Proteins, Functions, Methods, and More |
Margaret Gabanyi |
| 20347 | | E35 | Development of a Small Portable Application for Plant DNA Barcoding |
M Mehedi Hassan |
| 20773 | | E36 | MobiDB: a database of intrinsically disordered proteins |
Tomas Di Domenico |
| 20788 | | E39 | Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis - The CAMERA Resource |
Shulei Sun |
| 22653 | | E40 | Embryonic Stem Cell Database |
Elena Nikolaeva |
| 22628 | | E41 | RiceXPro and Rice TOGO Browser: Integrated Databases for Rice Functional and Applied Genomics |
Hajime Ohyanagi |
| 22699 | | E42 | SABIO-RK: Improvement of search capacities and user-friendliness |
Renate Kania |
| 22764 | | E45 | Correlation between annotation in the human gene database H-InvDB |
Katsuhiko Murakami |
| 22766 | | E46 | A Ruby API to query the Ensembl database for genomic features |
Jan Aerts |
| 20331 | | E47 | Identifying knowledge contributors – motivating online sharing of research data |
Gudmundur Thorisson |
| 22620 | | F01 | Multi-species integrative biclustering |
Richard Bonneau |
| 20273 | | F04 | The Operonic Location of Auto-Transcriptional Repressors is Highly Conserved in Bacteria |
Tal Pupko |
| 20407 | | F07 | Phylogenetic analysis of mapped sequence reads |
Jean-François Dufayard |
| 20418 | | F08 | Transcriptomic and metabolomic investigation of thermal stress response through metabolic modulations in seagrasses |
Jenny Gu |
| 20421 | | F09 | Positive Feedback and Tradeoff as Sources for Complexity in Social Interaction System |
Tomoyuki Yamamoto |
| 20538 | | F12 | Distribution patterns of genomic elements in bacteria using genome linguistic methods. |
Oliver Bezuidt |
| 20668 | | F13 | Gene expression evolution on the emergence of pathogenicity in Ascomycetes |
Aminael Sanchez-Rodriguez |
| 20630 | | F14 | Incorporating protein structure into coevolution analysis reveals functional side chain interactions in ABC-C exporters |
Attila Gulyas-Kovacs |
| 22689 | | F17 | A Phylogenetic Approach to Germline Methylome Reconstruction |
Lars Feuerbach |
| 22668 | | F18 | Probabilistic reconstruction of protein interaction histories using a simple measure of interaction affinity. |
Ryan Topping |
| 22672 | | F20 | TimeTree2: Species divergence times from molecular data |
Sudhir Kumar |
| 20648 | | F21 | Identifying Patterns of Balancing Selection by Comparing the Bonobo, Chimpanzee and Human Genomes |
Kay Prüfer |
| 20691 | | F22 | The Darwinian Tree Of Life In Light Of Horizontal Gene Transfer (Is Still Sound) |
Adam Sardar |
| 22171 | | G01 | Large-Scale Computational Identification of Regulatory SNPs |
Alberto Riva |
| 20188 | | G03 | Annotating New Genes: From In Silico Screening to Validations by Experiments |
Shizuka Uchida |
| 20349 | | G06 | Mining of Transcriptome of a climacteric fruit species Diospyros kaki Thunb for functional genomics |
Farzana Rahman |
| 20451 | | G10 | Human gene coexpression landscape and network: location of house-keeping and tissue-specific genes |
Alberto Risueño |
| 20526 | | G12 | Genomes and Evolutionary Analysese of Robust Oil Production in Microalgae |
Kang Ning |
| 20577 | | G14 | Analysis of protein functional sites encoding features |
Irina Medvedeva |
| 20660 | | G16 | An open source library for miRNA target prediction with a novel comparative genomics approach |
Charles Vejnar |
| 20674 | | G17 | From data to disease: Identification of genes with cell lineage specific expression in the human kidney |
Casey Greene |
| 20759 | | G22 | Estimating differential expression of transcripts with RNA-seq by using Bayesian Inference |
Peter Glaus |
| 20785 | | G23 | ARH-Seq: Alternative Splicing Robust Prediction by Entropy on RNA-Seq data |
Axel Rasche |
| 22726 | | G30 | The Limpopo MAGE-TAB Parser |
Tony Burdett |
| 22728 | | G31 | The Functional Genomics Software Suite |
Tomasz Adamusiak |
| 20834 | | G32 | Novel Method for Removal of Sequence Biases in ChIp-seq Data |
Joanna Raczynska |
| 20472 | | H2 | Improving the Accuracy of Automated Prokaryotic Gene Calling wih the Intergenic Region Scanner |
Heather Kent |
| 20484 | | H3 | Computing the probability of RNA hairpin and multiloop formation |
Peter Clote |
| 20522 | | H4 | A fast stochastic score based rank fusion method: application on miRNA target prediction |
Debarka Sengupta |
| 20189 | | I01 | Integrated prediction of protein functions in Arabidopsis thaliana by Bayesian Markov Random Fields |
Yiannis Kourmpetis |
| 20346 | | I06 | Nonparametric Approach to Analysis of Data-Rich Biological Problems |
Tatiana TATARINOVA |
| 20435 | | I08 | Genome Scale Annotation Using Rosetta De Novo Structure Predictions |
Kevin Drew |
| 20548 | | I09 | From next generation sequencing to knowledge: A case study of functional genomics annotation in prokaryotes |
Carlos Prieto |
| 20562 | | I10 | Human annotation in Ensembl |
Amonida Zadissa |
| 20413 | | I11 | Collaborative action between Spain and Austria to enhance the application of High Performance Computing to High throughput technologies |
Noura Chelbat |
| 20634 | | I12 | CHIPEAN – CHIP Seq Peak Annotation |
Agnes Hotz-Wagenblatt |
| 20647 | | I13 | Comprehensive Homeodomain Gene Annotation in Human and Mouse |
Veronika Boychenko |
| 20661 | | I14 | APPRIS - Canonical Isoforms for the Human Genome |
Michael Tress |
| 20814 | | I18 | Automated curation and assignment of massive DNA sequences |
Duong Vu |
| 20832 | | I19 | Characterization of Long Noncoding RNAs |
Andrea Tanzer |
| 22691 | | I21 | YGAP: the Yeast automatic Genome Annotation Pipeline |
Estelle Proux Wera |
| 22758 | | I22 | A genome-wide, functional analysis of transcription initiation and promoter architecture in the budding yeast Saccharomyces cerevisiae |
R. Taylor Raborn |
| 22695 | | I23 | Human transcriptome data in Ensembl |
Thibaut Hourlier |
| 20191 | | I24 | Extending Metagenomic Functional Annotation Through Functional Inference |
Gregory Vey |
| 19928 | | J01 | Microsoft Biology Initiative |
Beatriz Diaz Acosta |
| 19931 | | J02 | NUPTs and NUMTs from algae to land plants - a genomic analysis in 12 different species |
Noa Sela |
| 20259 | | J03 | Dissecting a massive parallel sequencing workflow for quantitative miRNA expression analysis |
Raffaele Calogero |
| 20284 | | J04 | Boosting the Principle Component Analysis for explorative analysis of genome-wide expressions reveals a common developmental pattern in human and mouse datasets |
Carlo Cannistraci |
| 20400 | | J09 | Rice-Map: a new-generation rice genome browser |
Ge Gao |
| 20440 | | J11 | The immense genomic variability of human olfactory receptor genes |
Tsviya Olender |
| 20495 | | J16 | Interactive Microbial Analysis and Visualization with GView and GView Server |
Aaron Petkau |
| 20541 | | J19 | SARUMAN - Using GPU programming for short read mapping |
Jochen Blom |
| 20534 | | J20 | Chipster genome browser: Smooth and interactive visualization of next generation sequencing data |
Aleksi Kallio |
| 20593 | | J22 | Associating Chromatin Features with Gene Expression |
Thomas Sakoparnig |
| 20604 | | J23 | Whole genome sequencing, assembly and annotation of the Saccharomyces cerevisiae strain CEN.PK 113-7D |
Dick de Ridder |
| 20607 | | J24 | Genometa - Accurate, flexible and fast taxonomic assignment for ultra-short metagenomic reads |
Colin Davenport |
| 20619 | | J25 | Comparing long maximal exact repeats in four human genome assemblies |
Sara Garcia |
| 20632 | | J26 | Revealing multiple nucleotide polymorphysms and indels in homopolymeric regions in human exome data |
Szilveszter Juhos |
| 20650 | | J27 | Double nucleotide polymorphisms in human pathogen Propionibacterium acnes strains |
Krisztina Rigo |
| 20672 | | J28 | Detecting homogenous methylation-domains within whole genome methylation maps |
Michael Hackenberg |
| 20744 | | J30 | Next generation sequencing and its application to study breast tumor subtypes |
Krishna Kalari |
| 20761 | | J31 | Bayesian Evaluation of de novo Genome Assembly |
Sergey Nikolenko |
| 20783 | | J32 | Extracting relationships from integrated functional genomics data with the Ontological Discovery Environment |
Jeremy Jay |
| 20822 | | J34 | Role of Conserved 3’-UTR Cis-elements in the Regulation of Human MECP2 and MAPT Genes Involved in Mental Disorders |
Joetsaroop Bagga |
| 20833 | | J35 | GARM - Genome Assembly, Reconciliation and Merging |
Fidel Sanchez-Flores |
| 20809 | | J38 | A-Bruijn graph approach to de novo genome assembly |
Mikhail Dvorkin |
| 20878 | | J39 | BLESS: mapping DNA double-strand breaks by next-generation sequencing |
Maga Rowicka |
| 20884 | | J41 | Identifying the Dynamic States of the 3D Genome Organization |
Andrzej Kudlicki |
| 20811 | | J42 | Instant-Seq - an integrated and fast Web-based program for analysis of (timecourse) ChIP-Seq data |
Abhishek Mitra |
| 20924 | | J43 | Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts |
Philipp Drewe |
| 22711 | | J45 | Multi-Image Genome Viewer (MIG) |
Stephen Taylor |
| 22683 | | J47 | Resource-Efficient de novo Assembly of Eukaryotic Genomes |
Bryan Beresford-Smith |
| 22667 | | J48 | The SMALT Software for the Efficient and Accurate Alignment of DNA Sequencing Reads |
Hannes Ponstingl |
| 22743 | | J49 | SeqGI: Sequence Read Enrichment at Genomic Intervals |
Ines de Santiago |
| 22752 | | J50 | Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome |
Wenjin Zheng |
| 19899 | | K1 | Partial Purification of Cellulase obtained from Tomato (Lycopersicon lycopersicum Karst) Fruits deteriorated by Aspergillus flavus Linn |
Adesola Ajayi |
| 20291 | | K2 | The EMBL-EBI User Survey |
Jennifer Cham |
| 20325 | | K3 | Identification of NMR Resonances Using EM Algorithms |
Martin Krone |
| 20046 | | K4 | In-silico analysis and prevention of Coksackie virus induced Insulin Dependent Diabetes Mellitus in human |
Ambuj Kumar |
| 20602 | | K5 | The Hellenic Society for Computational Biology and Bioinformatics |
Christos Ouzounis |
| 20703 | | K6 | A Need for Specific, Advanced Topic Bioinformatics Training: The Canadian Bioinformatics Workshop Series |
Michelle Brazas |
| 22656 | | K7 | Spanish National Bioinformatics Institute (INB) |
Allan Orozco |
| 20049 | | L01 | GENS2: a simulator for multiloci/whole-genome case-control studies with gene-environment interactions |
Roberto Amato |
| 22636 | | L02 | Universal epitope prediction for class II MHC |
Andrew Bordner |
| 20336 | | L06 | Characterization of compound gene regulation mechanisms |
Reiko Tanaka |
| 20380 | | L09 | Unraveling protein-protein interactions by a semi-automated high-throughput platform |
Dominik Mertens |
| 20399 | | L10 | Discovery of a 3D Motif Essential to LDLR-Protein Complexes: Application to docking prediction evaluation |
Reyhaneh Esmaielbeiki |
| 20420 | | L11 | Coevolution and Predicted Solvent Accessibility |
David Ochoa |
| 20499 | | L13 | On sequential conservation space of RNA-recognizing residues in protein sequences |
Li Xue |
| 20753 | | L14 | Functional assessment of topological characterization using graphlet degrees in PPI networks |
Marco Mina |
| 20560 | | L15 | SNP-SNP synergy discovery with SNPsyn |
Tomaz Curk |
| 20854 | | L16 | RISEARCH: Fast RNA Interaction Search |
Jan Gorodkin |
| 22631 | | L17 | Predicting conserved interactions and structures of two multiple alignments of RNA sequences. |
Stefan Seemann |
| 22682 | | L20 | A novel ultra-fast comparison method for known and potential ligand-binding sites of proteins |
Kentaro Tomii |
| 22572 | | L21 | New methods for finding common insertion sites and co-occurring common insertion sites in transposon- and virus-based genetic screens |
Tracy Bergemann |
| 22744 | | L23 | An alternative approach to protein docking: Complexes via homology modeling |
Ozlem Tastan Bishop |
| 22619 | | M01 | Fast and Efficient Dynamic Nested Effects Models |
Holger Fröhlich |
| 20035 | | M02 | Prediction of bioluminescent proteins based on Discrete Wavelet Transform and Support Vector Machine |
Krishna Kumar kandaswamy |
| 22609 | | M03 | A new approach for discovering knowledge from a large mass of data and optimisation of the numbers of variables before learning Bayesian Networks structure: Application in genetic studies of complex g |
Heni Bouhamed |
| 20265 | | M04 | R-value: A new measure for dataset evaluation |
Sejong Oh |
| 20321 | | M05 | Transcription Regulation: models for combinatorial regulation and functional specificity |
David Thomas |
| 20343 | | M06 | Contrasting the Molecular Basis of Human and Mouse Embryonic Stem Cell Self-Renewal Using Bayesian Network Machine Learning Methods |
Karen Dowell |
| 20350 | | M07 | A new feature selection method based on classes overlap |
Sejong Oh |
| 20395 | | M08 | Protein subnuclear localization using a spectrum kernel minimum distance probability method |
Esteban Vegas |
| 20409 | | M09 | SVM-based prediction of granzyme B cleavage sites |
Lawrence Wee |
| 20425 | | M10 | Genome-wide enhancer discovery from chromatin methylation marks using Genetic Algorithm-optimized Support Vector Machines |
Michael Fernandez |
| 20449 | | M11 | Machine Learning Approaches to Identify and Characterize Effector Proteins in Pathogenic Bacteria |
David Burstein |
| 20576 | | M13 | Assessment of protein interaction prediction from sequence data using n-gram analysis |
Guray Kuzu |
| 20575 | | M14 | Model selection for predictive and prognostic gene signatures |
Miika Ahdesmaki |
| 20662 | | M16 | Dealing with Uncertainty in Support Vector Machines Prediction |
Sorin Draghici |
| 20665 | | M17 | Identification of SH2-peptide interactions using support vector machine |
Kousik Kundu |
| 20688 | | M18 | A Support Vector Machine approach for rapid genome-wide epistasis detection |
Barbara Rakitsch |
| 20717 | | M19 | Time series classifier model for miR-mRNA interaction |
Jovan Rebolledo-Mendez |
| 20719 | | M20 | mTiM: margin-based transcript mapping from RNA-seq |
Nico Görnitz |
| 20855 | | M21 | A Computational Paradigm for More Specific TFBS Detection |
Heike Sichtig |
| 20896 | | M22 | Combined Approach to Anaphora Resolution for Disease-Determinants Ontology Learning from Web Sources |
Jae-Hong Eom |
| 20156 | | N01 | Power and minimal sample size for multivariate analysis of microarrays |
Maarten Iterson |
| 20344 | | N05 | caArray: make microarray data easily accessible and exchangeable |
Xiaopeng Bian |
| 20351 | | N06 | A combination technique for microarray dataset to improve classification accuracy |
Sejong Oh |
| 20462 | | N09 | ASPIRE: An improved tool for the analysis of alternative splicing using AltSplice microarrays |
Melis Kayikci |
| 20498 | | N10 | Meta-analysis of gene expression microarrays with missing replicates |
Fan Shi |
| 20505 | | N12 | Feature selection for specifying experimental conditions that activate gene transcriptions |
Sho Ohsuga |
| 20387 | | N13 | A Method for Inference of Gene Regulatory Network based on Bayesian Network with Uniting of Partial Problems |
Yukito Watanabe |
| 20550 | | N15 | Prediction of specific versus non-specific RBP-RNA interaction |
Eleonora Kulberkyte |
| 20561 | | N16 | cn.FARMS: a latent variable model to detect copy number variations in microarray data with a low false discovery rate |
Djork-Arné Clevert |
| 20608 | | N18 | COLOMBOS: Access Port for Cross-Platform Bacterial Expression Compendia |
Kristof Engelen |
| 20666 | | N24 | Simulation strategies to evaluate the performance of pathway-based gene expression analysis methods |
Shailesh Tripathi |
| 20747 | | N25 | Signaling Pathway Coupling Phenomena |
Michele Donato |
| 20699 | | N27 | Alternative Splicing in Malignant Lymphoma |
Karin Zimmermann |
| 20823 | | N29 | Flanking sequence effects on oligonucleotide hybridization |
D. Andrew Carr |
| 20872 | | N30 | Elimination of spatial autocorrelation in microarray data |
Sébastien Lemieux |
| 22647 | | N31 | A Computational Study of Carotenoid Gene Expression using Micro-array Data |
Firdous Khan |
| 22662 | | N32 | A survey of batch effects in public gene expression data |
Paul Pavlidis |
| 22735 | | N36 | Using R through a Tiki web interface to implement bioinformatics pipelines |
Xavier Pedro Puente |
| 22750 | | N37 | Combining omics data and biological knowledge using multiple factor analysis |
Jose Luis Mosquera |
| 20287 | | O1 | An integrated approach to the alignment and classification of 3D neuronal morphology in the Drosophila brain |
chao-chun chuang |
| 20569 | | O2 | Effect of Leaky Channels in Calcium Homeostasis |
Suhas Vasaikar |
| 22618 | | P01 | Benchmarking Ontologies: Bigger or Better? |
Lixia Yao |
| 20032 | | P03 | A Modular Annotation Framework for Mathematical Models |
Michael Cooling |
| 20327 | | P04 | An ontology of bioinformatics tool functions, data types and formats |
Jon Ison |
| 20328 | | P05 | Multiple Ontology Based System for Integrating and Display Rat Phenotype Data |
Mary Shimoyama |
| 20473 | | P06 | ontoCAT R package for ontologies traversal and search |
Natalja Kurbatova |
| 20527 | | P07 | What does semantic similarity mean in terms of protein function comparison? The analysis of relation between functional and structural similarity. |
Bogumil Konopka |
| 20566 | | P08 | A Semantic Web Infrastructure for Bioinformatics of Staphylococcus aureus |
Cândida Delgado |
| 20581 | | P09 | A standard for cooperative interactions |
Kim Van Roey |
| 20801 | | P11 | BioPAX – A Community Standard for Pathway Data Sharing |
Nadia Anwar |
| 20299 | | Q01 | Signatures of positive selection on genes of the N-Glycosylation pathway concentrate on genes with regulatory positions |
Giovanni Marco Dall'Olio |
| 20417 | | Q03 | cn.MOPS: Mixture of Poissons for Discovering Copy Number Variations in Next Generation Sequencing Data |
Günter Klambauer |
| 20490 | | Q04 | Deep-sequencing reveals phage-driven diversification of Pseudomonas aerugionsa biofilms |
Kerensa McElroy |
| 20810 | | Q07 | INRICH: improved enrichment testing method that integrates an unbiased GWAS strategy with prior biological knowledge: application to Type 2 diabetes |
Phil Lee |
| 20363 | | R01 | Statistical approach to absolute protein quantification |
Sarah Gerster |
| 20633 | | R03 | Chimeras knocking at the door |
Milana Frenkel-Morgenstern |
| 20676 | | R04 | Bioinformatics for Proteomics: developing new tools for the analysis of experimental data |
Angelo Facchiano |
| 20707 | | R05 | Predict subcellular localization for proteins in all kingdoms |
Tatyana Goldberg |
| 20637 | | R06 | Quantitative mass spectrometry data based pathway analysis |
Philipp Gormanns |
| 20752 | | R08 | PRIDE, the PRoteomics IDEntifications database |
Johannes Griss |
| 20756 | | R09 | Lost Data – The Consequences of Changing Protein Accession |
Johannes Griss |
| 20768 | | R10 | Proteomics based genome annotation using conceptually translated ESTs |
Paul Blakeley |
| 20825 | | R11 | Data mining on a leukemia phosphoproteome dataset: insights on chemoresistant cell signaling |
Renato Milani |
| 22659 | | R12 | Identification of protein expression dynamics during germination in Streptomyces |
Eva Strakova |
| 22748 | | R13 | Tracing Evolutionary Events Over Ancestral Proteomes |
Matt Oates |
| 22767 | | R14 | Viral proteins acquired from a host converge to simplified domain architectures |
Nadav Rappoport |
| 20174 | | S01 | Gene Array Analyzer (GAA): Alternative usage of gene arrays to study alternative splicing events |
Pascal Gellert |
| 20271 | | S02 | Cell specific gene expression from histome modifications and transcription factor binding |
Thaís Rêgo |
| 20311 | | S05 | Induction of Effectors in Diuraphis noxia after Feeding on Preference and Non-preference Wheat Hosts |
Nicolaas Burger |
| 20370 | | S06 | ConTra v2: a tool to identify transcription factor binding sites across species, update 2011 |
Stefan Broos |
| 20535 | | S08 | Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection |
Kathleen Marchal |
| 20542 | | S09 | Transcriptional cross-regulation as survival mechanism in bacteria |
Pieter Monsieurs |
| 20558 | | S10 | A probabilistic model for prediction of Transcription Start Regions in both intra- and inter-genic miRNAs |
Annalisa Marsico |
| 20587 | | S11 | Analysis of the structure and evolutionary conservation of regulatory networks in prokaryotes. |
Richard Münch |
| 20657 | | S12 | PRODORIC - a platform for the elucidation of gene regulatory networks in prokaryotes - from data to models |
Richard Münch |
| 20876 | | S14 | Identifying CNVs of regulatory elements which impact overall survival in serous cystadenocarcinoma |
Geoff Macintyre |
| 20889 | | S16 | Improved in silico regulatory SNP detection facilitates large scale SNP scanning |
Geoff Macintyre |
| 22737 | | S18 | Identification of shortened 3’untranslated regions by Affymetrix genechip arrays |
Loredana Martignetti |
| 22757 | | S19 | Integrative approach at building and analyzing gene regulatory networks |
Julia Ponomarenko |
| 20493 | | T1 | A Framework for the Evaluation of Bioinformatics Methods |
José M. Fernández |
| 20612 | | T2 | eBiomics: an e-Learning Environment on Bioinformatics for Life Scientists |
Patrick Koks |
| 20873 | | T3 | Practical NGS Analysis: A Bioinformatician’s Perspective |
Abhishek Pratap |
| 20891 | | T4 | A Review of Software for Visualization and Interpretation of Genome Wide Association Studies Results |
Armita Zarnegar |
| 22626 | | U03 | Accurate quantification of transcriptome from RNA-Seq data by effective length normalization |
Sanghyuk Lee |
| 20183 | | U04 | Application of whole genome resequencing to detect sequence polymorphisms underlying boar taint |
Rahul Agarwal |
| 20186 | | U05 | High-throughput protein analysis in the cloud |
Guy Yachdav |
| 20197 | | U06 | Evolutionary Conservation and Genetic Variability of Hepatitis C Virus Core Protein (HCVc) |
Muhammad Ilyas |
| 20256 | | U07 | A method to separate function and fold specific residues in a protein. |
Andrew Lynn |
| 20298 | | U10 | EMBOSS: EuropeanMolecular Biology Open Software Suite |
Peter Rice |
| 20383 | | U11 | SKM: A String Kernel Motifs Classifier for Nucleic Acid and Protein Sequences |
Hugh Shanahan |
| 20392 | | U12 | P-value based motif identification using positional weight matrices |
Holger Hartmann |
| 20450 | | U14 | Toolbox for the analysis of Roche 454 Sequencing data |
Christian Ruckert |
| 20460 | | U15 | Comrad: Detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data |
Andrew McPherson |
| 20470 | | U16 | The Interlaboratory Robustness of Next-Generation Sequencing (IRON) Study |
Hans-Ulrich Klein |
| 20502 | | U20 | Improved performance of sequence search algorithms in remote homology detection |
Ramanathan Sowdhamini |
| 20513 | | U21 | New method of detecting pathogenic viruses using high-throughput sequencing data |
Shumpei Ishikawa |
| 20520 | | U22 | Perfect Hamming Code as Hash key for Fast Genome Mapping |
Yoichi Takenaka |
| 20524 | | U24 | fastapl -- a utility for versatile and easy processing of multifasta format data |
Paul Horton |
| 20539 | | U25 | Behind the significance in NGS reads assembly |
Antonio Muñoz |
| 20559 | | U26 | Computational Analysis of DNA Replicases in Double-Stranded DNA Viruses: Relationship with the Genome Size |
Darius Kazlauskas |
| 20565 | | U27 | A novel miRNA prediction method based on next generation sequencing technology |
Kui Qian |
| 20580 | | U28 | Sequence alignment of coiled coil proteins: adapting to restricted sequence variation |
Michael Kuhn |
| 20592 | | U29 | Computational prediction of transposon insertion sites in bacterial genomes |
Michael Steinert |
| 20606 | | U30 | Improving SNV calling sensitivity by probabilistically combining SNVs reported by different calling tools |
Alejandro Balbin |
| 20547 | | U31 | Integrating Protein Domain Prediction in Multiple Sequence Alignment |
Layal Al-Ait |
| 20663 | | U32 | A new algorithm for sequencing by hybridization based on non-classical approach |
Marcin Radom |
| 20682 | | U34 | Computational challenges in the production and analysis of Illumina Genome Analyzer data |
Martin Kircher |
| 20685 | | U35 | Simulating Quality and Depth of Sequence for Genotype Accuracy |
Iain Bancarz |
| 20730 | | U37 | Using next-generation sequencing “dark matter” to identify a new transposable element location in the mouse genome. |
James Cavalcoli |
| 20750 | | U39 | A Conditional Random Fields Model for RNA Conformation Sampling |
Jinbo Xu |
| 20763 | | U40 | A new approach to suboptimal pairwise sequence alignment |
Feng Lou |
| 20758 | | U41 | Support Vector Machines for finding deletions and short insertions using paired-end short reads |
Dominik Grimm |
| 20770 | | U42 | A combination of amino acid composition and matching for conotoxin superfamily classification |
Nazar Zaki |
| 20781 | | U43 | Ranking and filtering translocations in paired-end sequencing data using BLAT realignment |
Christoph Bartenhagen |
| 20808 | | U45 | Distributed Web Services for Bioinformatics: Multiple Sequence Alignment |
Peter Troshin |
| 20806 | | U46 | Pythoscape: A Software Framework for Generation of Large Protein Similarity Networks |
Alan Barber |
| 20596 | | U47 | LaTcOm: A web server for visualizing rare codon clusters |
Athina Theodosiou |
| 20830 | | U48 | SRS 3D - Integrating structures, sequences and annotations |
Andrea Schafferhans |
| 20680 | | U49 | Multiobjective sequence alignment: Formulation and Algorithms |
Maryam Abbasi |
| 20838 | | U50 | An improved RIP-Seq Toolkit to Reveal Genome-wide Exon Junction Complex Landscape |
Alper Kucukural |
| 20870 | | U54 | Visualizing the next generation of sequencing data with GenomeView |
Thomas Abeel |
| 22643 | | U55 | SlideSort: Fast and exact algorithm for Next Generation Sequencing data analysis |
Kana Shimizu |
| 22706 | | U56 | Who & How: Investigating miRNA Regulation in Ranked Gene Lists using miRnaPursuit. |
Teresa Colombo |
| 22736 | | U60 | Performing Functional Site Prediction on Protein Sequences Generated by De Novo Transcriptome Assembly |
Chien-Yu Chen |
| 22671 | | U61 | MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods |
Sudhir Kumar |
| 22739 | | U62 | Twenty-Five Fold Diversity Overestimation Revealed by Analyzing a MOCK Sample using 454 Amplicon Pyrosequencing |
Sebastian Jünemann |
| 22654 | | U64 | ADDAPTS: A Data-Driven Automated Pipeline and Tracking System |
Risha Narayan |
| 20048 | | V1 | P.R.E.S.S.--- An R-package for Exploring Residual-Level Protein Structural Statistics |
Yuanyuan huang |
| 22630 | | V2 | DIBER: protein, dna or both? |
Grzegorz Chojnowski |
| 20736 | | V6 | The Biochemical Algorithms Library (BALL) - Rapid Application Development in Structural Bioinformatics |
Andreas Hildebrandt |
| 20745 | | V7 | SymD server: a platform for detecting internally symmetric protein structures |
Chin-Hsien (Emily) Tai |
| 19881 | | W01 | A Time-Dependent Framework for Solving the Degeneracy Problem in RNA Secondary Structure Deleterious Mutation Prediction |
Danny Barash |
| 22613 | | W02 | Correcting protein alignment errors using a novel multiple-template threading method |
Jinbo Xu |
| 22602 | | W03 | All-atom knowledge-based potential for RNA structure prediction and assessment |
Emidio Capriotti |
| 22601 | | W04 | A structural and dynamical model of human telomerase |
Samuel Flores |
| 20359 | | W05 | Optimization of residual electrostatic environment to enhance protein thermal stability |
Chi-Wen Lee |
| 22616 | | W06 | Complex networks govern coiled coil oligomerization - predicting and profiling by means of a machine learning approach |
Ulrich Bodenhofer |
| 22634 | | W08 | The imprint of codons on protein structure |
Charlotte Deane |
| 20154 | | W09 | PyRy3D: a software tool for modelling of large macromolecular complexes |
Joanna Kasprzak |
| 20177 | | W10 | Planar shape representation based Protein function prediction |
Heng Yang |
| 20212 | | W12 | MODORAMA - a web application for comparative protein structure modeling |
Jan Kosinski |
| 20275 | | W13 | Mean Scaled RMSD: A Size Independent Measure For Superimposition of Protein Structures |
Seyed Shahriar Arab |
| 20286 | | W14 | Probabilistic model for secondary structure prediction from protein chemical shifts |
Martin Mechelke |
| 20294 | | W15 | Multi-LZerD: Multiple protein docking for asymmetric complexes |
Juan Esquivel-Rodríguez |
| 20297 | | W16 | Modelling Protein Domain Binding to Kinase Structures altered by Phosphorylation |
Christoph Gernert |
| 20345 | | W17 | Full atom comparative three-dimensional modeling of protein-DNA complexes |
Francisco Melo |
| 20352 | | W18 | Identification of cavities on protein surface using multiple compu-tational approaches for drug binding site prediction |
Bingding Huang |
| 20364 | | W19 | Physical contacts-based score for evaluation of protein three-dimensional models |
Kliment Olechnovic |
| 20373 | | W21 | The influence of the local sequence environment on RNA loop structures |
Dirk Walther |
| 20402 | | W23 | Peptides modulating conformational changes: From in silico design to preclinical proof of concept |
Itamar Borukhov |
| 20412 | | W24 | Spritz: Intrinsic protein disorder prediction for genomes and insights into protein function. |
Ian Walsh |
| 20433 | | W26 | Slip symmetry – a new type of symmetry in protein structures |
Dukka KC |
| 20474 | | W27 | A multiple-template approach to protein threading |
Jinbo Xu |
| 20483 | | W28 | A novel type of methyltransferase encoded by a conserved domain of GRAS |
Magdalena Dymecka |
| 20461 | | W29 | Implementation of the Protein Fluorescence And Structural Toolkit (PFAST) |
Cynthia Prudence |
| 20504 | | W30 | Maximal Use of Information Found in All Protein Structure Data |
Armando Solis |
| 20557 | | W33 | Protein function prediction using clustering method of Protein-Protein Interaction network |
Sejong Oh |
| 20588 | | W34 | Comprehensive study of HOX transcription factors DNA binding specificity |
Katarzyna Kokoszynska |
| 20597 | | W36 | The MULTICOM Toolbox for Protein Structure Prediction |
Jianlin Cheng |
| 20601 | | W37 | Comprehensive structure-to-function analysis of transcription factor IID (TFIID) complex |
Maja Małkowska |
| 20616 | | W38 | Structure-based classification of the plant non-specific lipid transfer protein superfamily towards its functional characterization |
Cécile Fleury |
| 20635 | | W39 | A comparative study on filtering protein secondary structure prediction |
Chris Christodoulou |
| 20645 | | W40 | firestar in 2011 |
Michael Tress |
| 20675 | | W42 | BOCTOPUS: Topology prediction of Transmembrane beta barrel proteins |
Sikander Hayat |
| 20679 | | W43 | Analysis of Functional Islands using Structural Clustering |
Anne-Christin Hauschild |
| 20712 | | W45 | Predicting the 3d DNA structure of the human genome |
Sven Bilke |
| 20734 | | W46 | Binding Ligand Prediction by Comparing Local Surface Patches of Potential Pocket Regions |
Daisuke Kihara |
| 20764 | | W48 | ProBiS: A web server for detection of structurally similar protein binding sites |
Janez Konc |
| 20478 | | W49 | Protein conformational movements modeling based on the average action principle |
Alexander Krass |
| 20767 | | W50 | Evaluation of transmembrane helix (TMH) packing prediction methods on successive in sequence TMHs |
Vasilis Promponas |
| 20792 | | W52 | Are Protein Disordered Regions Equal to Loops? |
Esmeralda Vicedo |
| 20695 | | W53 | Environment Specific Substitution Tables Improve Membrane Protein Alignment |
Jamie Hill |
| 20819 | | W54 | Quality or Quantity of Structural Dynamics Information: That is the Question! (when improving performance of structure-based function prediction methods) |
Dariya Glazer |
| 20837 | | W55 | Nearest-Neighbor Approaches to Predict Protein Function by Sequence Homology Alone |
Tobias Hamp |
| 20578 | | W58 | Is the biological hydrophobicity scale correct? |
Christoph Peters |
| 20892 | | W60 | A comprehensive review of protein fold space and the correlation of structure with function |
Spencer Bliven |
| 20897 | | W61 | Protein interaction partners revealed by their dynamical properties |
Jau-Ji Lin |
| 22693 | | W65 | Is It Biologically Relevant? An Evolutionary Method for Distinguishing Biological Interfaces from Crystal Contacts |
Guido Capitani |
| 22670 | | W66 | SAHG, a comprehensive database of annotated structure models for human proteins |
Chie Motono |
| 22721 | | W67 | Training bidirectional recurrent neural networks with Conjugate gradient-type algorithms for protein secondary structure prediction |
Chris Christodoulou |
| 22759 | | W68 | Protein Sequence Design Using Ensemble-Based Energetic Information |
James Wrabl |
| 22761 | | W69 | Predicting Functions of the Universal Stress Proteins in Metabolically Versatile Rhodopseudomonas palustris |
Shaneka Simmons |
| 22663 | | W70 | The Impact of Multifunctional Genes on "Guilt by Association" Analysis |
Jesse Gillis |
| 22717 | | W71 | Understanding protein-protein interactions: Efficient classification of physiological and non-physiological protein complexes and unexpected conservation in interaction interfaces |
Dmitry Korkin |
| 20622 | | W72 | Protein Structural Domain Assignment Using Delaunay Tessellation |
Todd Taylor |
| 19952 | | X01 | A regulatory network model of CD4+ lymphocytes |
Luis Mendoza |
| 20054 | | X03 | ALISSA-An Automated Live Cell Imaging System for Signal Transduction Analyses |
Heinrich Huber |
| 22605 | | X04 | Interactive, multiscale navigation of large and complicated biological networks |
Thanet Praneenararat |
| 22637 | | X05 | Finding out what happened -- Highlighting the essence of a biological experiment |
Georg Fuellen |
| 22639 | | X06 | Topological network alignment uncovers biological function and phylogeny |
Natasa Przulj |
| 20159 | | X07 | Inferring the role of alternative splicing on biological pathways: Studies using cancer transcriprome data |
Murlidharan Nair |
| 20258 | | X08 | Genetic Design Through Branch and Bound |
Dennis Egen |
| 20276 | | X09 | Bridging clinical knowledge to molecular events through integration of imaging biomarkers and protein interactions in Alzheimer’s disease |
Erfan Younesi |
| 20281 | | X10 | Network-based approach towards candidate gene prioritisation using TargetMine |
Lokesh Tripathi |
| 20285 | | X11 | Integrated cell cycle and DNA repair signalling network modelling for identification of key molecular regulators in basal-like breast cancer |
Inna Kuperstein |
| 20292 | | X12 | An interface analysis of human E2-E3 complexes: structural insights into specificity |
Gozde Kar |
| 20296 | | X13 | How little do we actually know? – Towards the size of gene regulatory networks. |
Richard Röttger |
| 20367 | | X16 | A Directed Graphical Gaussian Model for Inferring Gene Regulatory Networks |
Tomoshige Ohno |
| 20368 | | X18 | Fast and Efficient Dynamic Nested Effects Models |
Holger Fröhlich |
| 20378 | | X20 | bioCompendium: high-throughput experimental data analysis platform |
Venkata Satagopam |
| 20424 | | X22 | Detection of nonlinear effects in gene expression pathways |
Andreas Mayr |
| 20434 | | X23 | Network topology complements sequence as a source of biological information |
Tijana Milenkovic |
| 20436 | | X24 | Understanding temporal patterns in cell cycle regulation through visualization |
Maria Secrier |
| 20444 | | X25 | From WIPA (Web Interface Protein Atlas) to Systems Biology Analysis of Protein Atlas Tissue Microarrays (TMAs) |
Hans-Juergen Thiesen |
| 20341 | | X27 | Mapping Genetic Interactions in Various Contexts Provides Complementary Information |
Magali Michaut |
| 20496 | | X30 | Construction of a drug-target-disease network and its application to drug repositioning and mode of action analysis |
Charny Park |
| 20511 | | X31 | Finding sets of shortest elementary flux modes that decompose genome-scale metabolic flux distributions |
Siu Hung Joshua Chan |
| 20521 | | X34 | Different regulatory networks of SOX2 in embryonic and neural stem cells |
Sanghyuk Lee |
| 20528 | | X35 | Interspecies translation of disease networks increases robustness and predictive accuracy |
Yahya Anvar |
| 20553 | | X38 | An Integrated Approach To Identify Human MicroRNA-Targets. |
Kim Wan Kyu |
| 20582 | | X42 | Cholesterol-Responsive Gene Network Reconstruction from Hypercholesterolemic Mice Transcriptome Data |
Gustavo Hime |
| 20477 | | X47 | Integrated Inference and Analysis of Regulatory Networks Using Multi-level Measurements |
Christopher Poultney |
| 20651 | | X49 | Topological features predict misannotations in metabolic network |
Rodrigo Liberal |
| 20654 | | X51 | Candidate gene prediction using integrative and network-based approaches - Mining Pig QTL |
Keywan Hassani-Pak |
| 20673 | | X52 | Organizational structure of the peripheral gene regulatory network in B-cell lymphoma |
Ricardo de Matos Simoes |
| 20713 | | X56 | A Novel Reverse Engineering Method for Gene/Protein Network Reconstruction - Divergence Weighted Independence Graphs |
Yang Xiang |
| 20714 | | X57 | Joint Dynamic Networks of miRNA and Transcripton Factor Regulation |
Marcel Schulz |
| 20740 | | X58 | KeyPathwayMiner - Detecting case-specific biological pathways by using expression data |
Hande Kucuk |
| 20749 | | X59 | Finding Consistent Explanations for Observations from Genome-Wide Mutant Assays |
Deborah Chasman |
| 20786 | | X61 | Delineating signaling network from cancer related pathways |
Chandrajit Lahiri |
| 20796 | | X63 | A network topology-based machine learning approach to extract relevant cancer-related signaling subnetworks |
Marcio Acencio |
| 20802 | | X65 | HotRegion: A web server of cooperative hot spots |
Engin Cukuroglu |
| 20803 | | X66 | GraphCrunch 2 Network Analysis Tool and MI-GRAAL Network Aligner |
Natasa Przulj |
| 20804 | | X67 | Minimum Curvilinearity to address high-throughput protein-protein interaction experiments |
Gregorio Alanis-Lobato |
| 20828 | | X69 | Aligning multiple time-series experiments to learn regulatory models: An application to modeling the core network in stem cell differentiation |
Irene Ong |
| 20841 | | X70 | Structural Analysis of Correlation Networks in Bioinformatics: Graph Theoretic Substructures and the Corresponding Cellular Functions |
Kathryn Dempsey |
| 20863 | | X71 | Systematic, comparative network analysis related to human disease |
Serene Wong |
| 20871 | | X72 | Systematically mapping the druggable pathways of Saccharomyces cerevisiae |
Kristen Fortney |
| 20868 | | X73 | Global gene network alignment among species by using graph summarization |
Aika Terada |
| 20851 | | X74 | A systems approach to learning the regulatory network of T helper-17 differentiation |
Aviv Madar |
| 20880 | | X76 | Modeling the Spatiotemporal Pattern of Gene Expression During Somitogenesis with Maximum Entropy Deconvolution. |
Andrzej Kudlicki |
| 20848 | | X77 | Characterization of transcription factor and microRNA regulatory networks involved in myelination |
Li-Wei Chang |
| 20931 | | X78 | Extending the Yeast Metabolic Network Using Integrated System Biology Approach |
Paul Fisher |
| 22658 | | X79 | An Epistatic Profile of the Cell Envelope Biogenesis in Escherichia coli Evidences Extensive Genetic and Functional Crosstalk Between Processes |
Juan Diaz-Mejia |
| 22686 | | X84 | Correction for ascertainment bias in S. cerevisiae interactions: an insight |
Jonathan Dickerson |
| 22688 | | X85 | Using community structure for complex network layout |
Oliver Duerr |
| 22722 | | X86 | Quantifying the Response of a Biological System using Network Perturbation Amplitudes |
Sam Ansari |
| 22741 | | X88 | Causal Reasoning on Biological Networks: Interpreting transcriptional changes |
Daniel Ziemek |
| 22760 | | X91 | A multi-level Bayesian model for identifying predictive combinations of signaling network modules, proteins, and phosphopeptides for cancer treatments |
Ann Chen |
| 22646 | | X94 | Generative Probabilistic Models for Protein-Protein Interaction Networks – The Biclique Perspective |
Regev Schweiger |
| 22607 | | Y01 | Biomedical Natural Language figure Processing for Intelligent Figure Search |
Hong Yu |
| 20365 | | Y04 | ANDCell-ANDVisio system: knowledge extraction using text-mining in the systems biology |
Pavel Demenkov |
| 20366 | | Y05 | Self-Training Improves Robustness of Protein-Protein Interaction Extraction from Text |
Philippe Thomas |
| 20385 | | Y06 | Extraction of protein cellular localization using the Locminer text mining system |
Martin Krallinger |
| 20438 | | Y07 | Reflect: a browser plugin for life scientist |
Janos Binder |
| 20573 | | Y08 | Biomedical text mining from multiple views: information fusion and vertical |
xinhai Liu |
| 20677 | | Y09 | Keyword Clustering in Biomedical Information Retrieval Using Evolutionary Algorithms |
Viktoria Dorfer |
| 20715 | | Y10 | Automating host-pathogen interaction discovery: an HIV case study |
Daniel Jamieson |
| 20754 | | Y11 | Relation-mining workflows to extract animal host-microorganism interactions in free text |
BalaKrishna Kolluru |
| 22747 | | Y12 | Overview of the second CALBC Challenge |
Senay Kafkas |
| 22751 | | Y13 | An exercise in kidney factomics: From article titles to RDF Knowledgebase |
James Eales |
| 22622 | | Z01 | BOOST: A Boolean Representation-based Method for Detecting SNP-SNP Interactions in Genome-wide Association Studies |
Xiang Wan |
| 22573 | | Z02 | Linguistic analysis of genomic islands reveals a recent acquisition of genetic materials by Mycobacterium tuberculosis from alpha-Proteobacteria |
Oleg Reva |
| 22562 | | Z07 | Structural Biology Meets Systems Biology: A Structural Systems Biology Approach for Gauging the Systemic Effect of Single Nucleotide Polymorphisms |
Tammy Cheng |
| 22560 | | Z08 | In silico prediction of the calpain degradome |
Lawrence Wee |
| 22559 | | Z09 | A scalable signaling map identifies cross-talk between gene modules inferred from multi-parametric RNAi phenotypes |
Xin Wang |
| 22557 | | Z11 | PINALOG: a novel approach to align protein interaction networks – implications for function prediction and complex detection |
Hang Phan |
| 22553 | | Z14 | Comparing nucleotide-based and codon-based alignment of human next-gen sequencing exome data |
Szilveszter Juhos |
| 22575 | | Z15 | RIBER and DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes. |
Grzegorz Chojnowski |
| 22576 | | Z16 | SpliceGrapher: Predicting Splice Graphs from Diverse Evidence |
Asa Ben-Hur |
| 22578 | | Z17 | Topological features predict misannotations in metabolic networks |
Rodrigo Liberal |
| 22579 | | Z18 | A Theoretical Approach to Identify Indispensable Proteins of the Type III Secretion Systems of Salmonella enterica Serovar Typhimurium Strain LT2 |
Chandrajit Lahiri |
| 22583 | | Z19 | Analysis of bacterial genes with disrupted ORFs reveals frequent utilization of Programmed Ribosomal Frameshifting (PRF) and Programmed Transcriptional Realignment (PTR). |
Pavel Baranov |
| 22584 | | Z20 | An Event-driven Approach to Study Operon Evolution |
Iddo Friedberg |
| 22586 | | Z21 | RTA and MultiRTA: Simple yet Accurate Methods for Predicting Class II MHC Epitopes |
Andrew Bordner |
| 22587 | | Z22 | Metagenomic Biomarker Discovery and Explanation |
Curtis Huttenhower |
| 22585 | | Z25 | RDyNet: bridging functional analyses and network visualization |
Mauro Alves Castro |
| 22593 | | Z26 | Modulators of microRNA Activity Regulate Glioblastoma Pathogenesis |
Xuerui Yang |
| 22599 | | Z27 | Scalable metabolic reconstruction for metagenomic data and the human microbiome |
Curtis Huttenhower |
| 22600 | | Z28 | Systems-level insights from modular decomposition of the yeast genetic interaction network |
Jeremy Bellay |
| 22592 | | Z29 | Large scale merging of microarrays. From curation to meta-curation |
Colin Molter |
| 20312 | | Z30 | INBIOMEDvision: Promoting and Monitoring Biomedical Informatics in Europe |
Victoria López Alonso |
| 20525 | | Z31 | Conveyor - A strong type workflow library |
Burkhard Linke |
| 20591 | | Z32 | New types of services in Mobyle 1.0 |
Herve Menager |
| 20620 | | Z33 | An integrated core facility to go from biology to data and answers |
Laurent Gautier |
| 20888 | | Z34 | Toward Genomic Data Sharing Directly at the Lab Site in the New Agent-Based Infrastructure OpenKnowledge |
Dietlind Gerloff |
| 22608 | | Z35 | New tools for RNA 3D structure modeling: inspirations from the protein world |
Janusz Bujnicki |
| 22604 | | Z36 | REPAIRtoire - a database of DNA repair pathways. |
Kaja Milanowska |
| 22603 | | Z37 | FABIA: Factor Analysis for Bicluster Acquisition |
Djork-Arné Clevert |
| 22621 | | Z38 | Malaria Endemicity among Pregnant Women in Urban and Semi-Urban Area in Southwest, Nigeria |
Tony Ojiezeh |
| 22641 | | Z39 | Strengths and limitations of the federal guidance on synthetic DNA |
Jean Peccoud |
| 22701 | | Z41 | Extraction protocol optimization for the LC-MS based global metabolite profiling of grapes |
Matthias Scholz |
| 22666 | | Z43 | Jalview 2.7 |
James Procter |
| 22753 | | Z52 | The reference species tree of (sequenced) life |
Julian Gough |