Conference on Semantics in Healthcare and Life Sciences (CSHALS)
Full Agenda*
(*Updated April 20, 2012. Schedule subject to change. )
Indicates that presentation slides or other resources are available. | go directly to :[Thursday - February 23] [Friday - February 24] | ||
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| Wednesday – February 22, 2012 | ||
| 7:30 am - 1:00 pm | Registration | |
| 8:30 am - 10:30 am |
*Notice to Tutorial Participants - Click here*
RPI-led Hands-on Tutorial - Semantic Healthcare and Life Sciences Tutorial: Mashing HC and LS Data CSHALS Tutorial Coordinator: Lee Feigenbaum Dominic DiFranzo, This email address is being protected from spambots. You need JavaScript enabled to view it. Presentation (.pdf)Jim McCusker, This email address is being protected from spambots. You need JavaScript enabled to view it. d3 Tutorial (web)Joshua Shinavier. This email address is being protected from spambots. You need JavaScript enabled to view it. http://services.fortytwo.net/linked-dataLinked Data diagram (.pdf)Location: Charles Suite - 2nd Floor Royal Sonesta Hotel |
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| 10:30 am - 11:00 am | Break | |
| 11:00 am - 12:15 pm | RPI-led Hands-on Tutorial (continues) | |
| 12:15 pm - 1:00 pm | Lunch | |
| 1:00 pm - 3:00 pm | RPI-led Hands-on Tutorial (continues) | |
| 3:00 pm - 3:15 pm | Break | |
| 3:15 pm - 5:00 pm | RPI-led Hands-on Tutorial (continues) | |
| 4:00 pm - 7:00 pm | Registration | |
| 4:00 pm - 5:00 pm | Poster (Author) Set-up |
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| 5:00 pm - 7:00 pm | Poster Reception | |
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| Thursday – February 23, 2012 | ||
| 7:30 am - 10:00 am | Registration | |
| 7:30 am - 8:30 am | Breakfast (continental) | |
| 9:00 am - 9:15 am | Welcome & Overview from Conference Chairs: Jill Mesirov (ISCB Board Member) Presentation (.pdf)Mike Bevil and Joanne Luciano Presentation (.pdf) |
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| 9:15 am - 10:00 am | Keynote 1 SMArt Semantics for Clinical Healthcare Delivery Dr. Isaac Kohane Director, Children’s Hospital Informatics Program Henderson Professor of Pediatrics and Health Sciences and Technology Harvard Medical School (HMS) Co-Director, HMS Center for Biomedical Informatics Director of the HMS Countway Library of Medicine Cambridge, MA - USA Presentation (.pdf) |
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| 10:05 am - 11:00 am | Literature | Executing Semantics Across Documents: Bringing Science Into Context Presenter: Anita de Waard Disruptive Technology Director, Elsevier Labs Utrecht, Netherlands |
| The Biospecimen Repository as Library: How HeLa is like Moby Dick Presenter: James McCusker Rensselaer Polytechnic Institute Troy, USA Presentation (web) |
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| 11:00 am - 11:20 am | Break | |
| 11:20 am - 11:40 am | Tech Talk 1 | Javascript - The Key to Successful SemWeb Deployments Presenter: Jans Aasman Franz Inc. Oakland, CA, USA |
| 11:45 am to 12:05 pm | Tech Talk 2 | Managing Bigdata® in Bioinformatics Presenter: Bryan Thompson SYSTAP LLC Greensboro, NC USA Presentation (.pdf) |
| 12:05 pm - 1:15 pm | Lunch | |
| 1:15 pm - 2:00 pm | Keynote 2 E-Science Dictates E-Publication - Nanopublications as a Substrate for In-silico Knowledge Discovery Dr. Barend Mons Scientific Director Netherlands Bioinformatics Center Biosemantics Group Leader, Leiden University Medical Centre Netherlands |
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| 2:05 pm - 3:30 pm | Community/Knowledge Management | The VIVO Ontology: Enabling Networking of Scientists Presenter: Ying Ding Indiana University Bloomington, USA Presentation (.pdf) |
| Domain Knowledge and Provenance-Integrated Knowledge Organization System Represented with RDFS and SPARQL Presenter: Young Soo Song Birmingham, USA Presentation (.pdf) |
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| E-Diary Data Collection in Neurology and Psychiatry: Computational Achievements and Challenges Presenter: Ron Calvanio Massachusetts General Hospital & Harvard Medical School Cambridge, USA Presentation (.pdf) |
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| 3:30 pm - 3:45 pm | Break | |
| 3:45 pm - 5:10 pm | Drug Discovery, Linked Data |
Target Identification Using an Integrated Subset of the Yeast Interactome with Chemical Genomic Data in RDF Presenter: Nadia Anwar General Bioinformatics Reading, United Kingdom Presentation (.pdf) |
| Chem2Bio2RDF: Linked Open Data for Drug Discovery Presenter: Bin Chen Bloomington, USA Presentation (.pdf) |
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| Using Linked Open Data to Inform the Drug Discovery Process Presenter: James Snowden UCB Celltech Slough, United Kingdom Presentation (.pdf) |
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| 5:15 pm - 6:00 pm | Keynote 3 Title: Inside the Mind of Watson Dr. Chris Welty IBM Research Scientist T.J. Watson Research Center New York, USA |
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| 6:00 pm - 6:05 pm | Daily Closing Remarks | Mike Bevil and Joanne Luciano, Conference Chairs |
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| Friday – February 24, 2012 | ||
| 7:30 am - 10:00 am | Registration | |
| 7:30 am - 8:30 am | Breakfast (continental) | |
| 8:30 am - 8:45 am | Review - Previous Day Mike Bevil and Joanne Luciano, Conference Chairs Presentation (.pdf) |
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| 8:45 am - 9:30 am | Keynote 4 The Knowledge Reengineering Bottleneck Dr. Rinke Hoekstra Knowledge Representation & Reasoning Group VU University Amsterdam Leibniz Center for Law, University of Amsterdam Netherlands Presentation (.pdf) |
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| 9:30 am - 10:25 am | Semantics in Research | sdlink: An Integrated System for Linking Biological and Biomedical Semantic Data Presenter: Alexandre Francisco Technical University of Lisbon Lisboa, Portugal |
| Spo: An Ontology for Describing Host-pathogen Interactions Inherent to Streptococcus Pneumoniae Infections Presenter: Cátia Vaz Poly Institute of Lisbon Lisbon, Portugal |
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| 10:25 am - 10:40 am | Break | |
| 10:40 am - 12:35 pm | Pharmacovigilance & Safety | Dynamic Enhancement of Drug Product Labels Through Semantic Web Technologies Presenter: Richard Boyce University of Pittsburgh Pittsburgh, USA Presentation (.pdf) |
| Adverse Events Following Immunization: Standardization, Automatic Case Classification and Signal Detection Presenter: Mélanie Courtot British Columbia Cancer Research Centre Vancouver, Canada Presentation (.pdf) |
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| Exploitation of Semantic Methods to Cluster Pharmacovigilance Terms Presenter: Natalia Grabar Universite Lille Villeneuve d’Ascq, France Presentation (.pdf) |
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| Annotation Analysis for Testing Drug Safety Signals Presenter: Trish Whetzel Stanford University Stanford, USA Presentation (.pdf) |
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| 12:35 pm - 1:30 pm | Lunch | |
| 1:30 pm - 2:15 pm | Keynote 5 Wolfram|Alpha and the Quest for Computational Knowledge Dr. Stephen Wolfram Founder & CEO Wolfram Research Wolfram Research Champaign, IL - USA |
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| 2:20 pm - 3:15 pm | Clinical Healthcare | Using Ontologies in the Age-Phenome Knowledge-base (APK) Presenter: Eitan Rubin Ben Gurion University Beer Sheva, Israel |
| Intelligent Surveillance of Health Care-associated Infections with SADI Semantic Web Services Presenter: Christopher Baker University of New Brunswick Saint John, Canada Presentation (.pdf) |
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| 3:15 pm - 4:15 pm | Panel Discussion | Moderators: Mike Bevil and Joanne Luciano, Conference Chairs |
| 4:15 pm - 4:30 pm | Future Actions Mike Bevil and Joanne Luciano, Conference Chairs |
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| 4:30 pm | Conference Adjourns | |
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