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TOP 10 PAPERS READING LIST 2013 - 2014

AS SELECTED AT RSG 2014

1. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position Buenrostro et al. (LA: Greenleaf), Nat Methods. 2013 Dec;10(12):1213-8.
   
   
2. Single-molecule dynamics of enhanceosome assembly in embryonic stem cells Chen et al. (LA: Liu) Cell. 2014 Mar 13;156(6):1274-85.
   
   
3. Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals Battle et al. (LA: Koller) Genome Res. 2014 Jan;24(1):14-24.
   
   
4. Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data Li et al. (LA: Brenner) Genome Res. 2014 Jul;24(7):1086-101.
   
   
5. Determination and inference of eukaryotic transcription factor sequence specificity Weirauch et al (LA: Hughes) Cell. 2014 Sep 11;158(6):1431-43.
   
   
6. A community effort to assess and improve drug sensitivity prediction algorithms Costello et al. (LA: Stolovitzky) Nat Biotechnol. 2014 Jun 1. doi: 10.1038/nbt.2877.
   
   
7. Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers Barozzi et al. (LA: Natoli) Mol Cell 2014 Jun 5;54(5):844-57
   
   
8. Enhancer loops appear stable during development and are associated with paused polymerase Ghavi-Helm et al. (LA: Furlong) Nature. 2014 Aug 7;512(7512):96-100.
   
   
9. TFBSshape: a motif database for DNA shape features of transcription factor binding sites Yang et al. (LA: Rohs) Nucleic Acids Res. 2014 Jan;42(Database issue):D148-55.
   
   
10. Genotype-environment interactions reveal causal pathways that mediate genetic effects on phenotype Gagneur et al. (LA: Steinmetz) PLoS Genet. 2013;9(9):e1003803.

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